eRNAs are required for p53-dependent enhancer activity and gene transcription

Carlos A Melo, Jarno Drost, Patrick J Wijchers, Harmen van de Werken, Elzo de Wit, Joachim A F Oude Vrielink, Ran Elkon, Sónia A Melo, Nicolas Léveillé, Raghu Kalluri, Wouter de Laat, Reuven Agami

Research output: Contribution to journalArticlepeer-review

457 Citations (Scopus)

Abstract

Binding within or nearby target genes involved in cell proliferation and survival enables the p53 tumor suppressor gene to regulate their transcription and cell-cycle progression. Using genome-wide chromatin-binding profiles, we describe binding of p53 also to regions located distantly from any known p53 target gene. Interestingly, many of these regions possess conserved p53-binding sites and all known hallmarks of enhancer regions. We demonstrate that these p53-bound enhancer regions (p53BERs) indeed contain enhancer activity and interact intrachromosomally with multiple neighboring genes to convey long-distance p53-dependent transcription regulation. Furthermore, p53BERs produce, in a p53-dependent manner, enhancer RNAs (eRNAs) that are required for efficient transcriptional enhancement of interacting target genes and induction of a p53-dependent cell-cycle arrest. Thus, our results ascribe transcription enhancement activity to p53 with the capacity to regulate multiple genes from a single genomic binding site. Moreover, eRNA production from p53BERs is required for efficient p53 transcription enhancement.

Original languageEnglish
Pages (from-to)524-35
Number of pages12
JournalMolecular cell
Volume49
Issue number3
DOIs
Publication statusPublished - 7 Feb 2013
Externally publishedYes

Keywords

  • Cell Cycle Checkpoints/genetics
  • Chromatin/metabolism
  • Chromosomes, Human/metabolism
  • Enhancer Elements, Genetic
  • Gene Expression Regulation, Neoplastic
  • Genes
  • Humans
  • MCF-7 Cells
  • Models, Genetic
  • Protein Binding/genetics
  • RNA/metabolism
  • RNA, Messenger/genetics
  • RNA, Untranslated/metabolism
  • Transcription, Genetic
  • Tumor Suppressor Protein p53/metabolism

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