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Organocatalytic Switches of DNA Glycosylase OGG1 Catalyze a Highly Efficient AP-Lyase Function

  • Mario Kehler
  • , Kaixin Zhou
  • , Aurino M. Kemas
  • , Alicia del Prado
  • , Emma Scaletti Hutchinson
  • , Elinor Hesslefors Nairn
  • , Marek Varga
  • , Yvonne Plattner
  • , Yi Zhong
  • , Oryn Purewal-Sidhu
  • , James Haslam
  • , Elisée Wiita
  • , Heather Gildie
  • , Karolina Singerova
  • , Zuzanna Szaruga
  • , Ingrid Almlöf
  • , Femke M. Hormann
  • , Kang Cheng Liu
  • , Olov Wallner
  • , Florian Ortis
  • Evert J. Homan, Opher Gileadi, Sean G. Rudd, Pål Stenmark, Miguel de Vega, Thomas Helleday, Nicholas D. D'Arcy-Evans, Volker M. Lauschke, Maurice Michel

Research output: Contribution to journalArticlepeer-review

6 Citations (Scopus)

Abstract

8-oxoGuanine DNA glycosylase 1 (OGG1) is the first known target of organocatalytic switches (ORCAs), which rewrite the biochemical function of the enzyme through redirection of its preferred substrate from 8-oxoG to AP sites. Previously, different ORCA chemotypes were shown to enhance the operational pH window for OGG1, possibly through direct involvement in proton transfer events during DNA strand cleavage. Accordingly, compound pKa is a crucial and necessary consideration for the identification and application of future OGG1 ORCAs. Here, we identify a minimal structure of organocatalytic switches–4-anilino pyridines and 6-anilino pyrimidines–which are dimethyl-amino-pyridine (DMAP)-type Brønsted bases binding the active site of OGG1. Systematic interrogation of compound basicity through modulation of electron-withdrawing (EWG) and electron-donating (EDG) substituents reveals that a pKa less or equal to the assay pH is a viable parameter for prediction of compound activity. The lead structure (AC50 13 nM, pKa 7.0) was then identified as a potent scaffold from a screen in a patient-derived 3D model of metabolic dysfunction-associated steatohepatitis (MASH), where it reduced hepatic fibrosis by 35%. Collectively, these findings deepen the knowledge of this novel modulator class, with important implications for future enzyme targets and probe development.

Original languageEnglish
Article numbere202500382
JournalChemistry - A European Journal
Volume31
Issue number33
DOIs
Publication statusPublished - 12 Jun 2025
Externally publishedYes

Keywords

  • Base excision repair
  • DNA glycosylase
  • DNA repair
  • OGG1
  • Organocatalytic switches
  • DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism
  • Catalytic Domain
  • Pyrimidines/chemistry
  • Humans
  • Guanine/analogs & derivatives
  • DNA/chemistry
  • Pyridines/chemistry
  • DNA Glycosylases/metabolism
  • Catalysis
  • Hydrogen-Ion Concentration

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