Standardized annotation of translated open reading frames

Jonathan M Mudge; Jorge Ruiz-Orera; John R Prensner; Marie A Brunet; Ferriol Calvet; Irwin Jungreis; Jose Manuel Gonzalez; Michele Magrane; Thomas F Martinez; Jana Felicitas Schulz; Yucheng T Yang; M Mar Albà; Julie L Aspden; Pavel V Baranov; Ariel A Bazzini; Elspeth Bruford; Maria Jesus Martin; Lorenzo Calviello; Anne-Ruxandra Carvunis; Jin Chen; Juan Pablo Couso; Eric W Deutsch; Paul Flicek; Adam Frankish; Mark Gerstein; Norbert Hubner; Nicholas T Ingolia; Manolis Kellis; Gerben Menschaert; Robert L Moritz; Uwe Ohler; Xavier Roucou; Alan Saghatelian; Jonathan S Weissman; Sebastiaan van Heesch

doi:10.1038/s41587-022-01369-0

Standardized annotation of translated open reading frames

Jonathan M Mudge
, Jorge Ruiz-Orera
, John R Prensner
, Marie A Brunet
, Ferriol Calvet
, Irwin Jungreis
, Jose Manuel Gonzalez
, Michele Magrane
, Thomas F Martinez
, Jana Felicitas Schulz
, Yucheng T Yang
, M Mar Albà
, Julie L Aspden
, Pavel V Baranov
, Ariel A Bazzini
, Elspeth Bruford
, Maria Jesus Martin
, Lorenzo Calviello
, Anne-Ruxandra Carvunis
, Jin Chen

Juan Pablo Couso, Eric W Deutsch, Paul Flicek, Adam Frankish, Mark Gerstein, Norbert Hubner, Nicholas T Ingolia, Manolis Kellis, Gerben Menschaert, Robert L Moritz, Uwe Ohler, Xavier Roucou, Alan Saghatelian, Jonathan S Weissman, Sebastiaan van Heesch

Group van Heesch

Research output: Contribution to journal › Article › peer-review

173 Citations (Scopus)

Original language	English
Pages (from-to)	994-999
Number of pages	6
Journal	Nature biotechnology
Volume	40
Issue number	7
DOIs	https://doi.org/10.1038/s41587-022-01369-0
Publication status	Published - Jul 2022

Keywords

Molecular Sequence Annotation
Open Reading Frames
Protein Biosynthesis
Ribosomes/metabolism

Access to Document

10.1038/s41587-022-01369-0

Cite this

Mudge, J. M., Ruiz-Orera, J., Prensner, J. R., Brunet, M. A., Calvet, F., Jungreis, I., Gonzalez, J. M., Magrane, M., Martinez, T. F., Schulz, J. F., Yang, Y. T., Albà, M. M., Aspden, J. L., Baranov, P. V., Bazzini, A. A., Bruford, E., Martin, M. J., Calviello, L., Carvunis, A.-R., ... van Heesch, S. (2022). Standardized annotation of translated open reading frames. Nature biotechnology, 40(7), 994-999. https://doi.org/10.1038/s41587-022-01369-0

@article{01e7573a1c304ad2aa31b40fa01023d4,

title = "Standardized annotation of translated open reading frames",

keywords = "Molecular Sequence Annotation, Open Reading Frames, Protein Biosynthesis, Ribosomes/metabolism",

author = "Mudge, \{Jonathan M\} and Jorge Ruiz-Orera and Prensner, \{John R\} and Brunet, \{Marie A\} and Ferriol Calvet and Irwin Jungreis and Gonzalez, \{Jose Manuel\} and Michele Magrane and Martinez, \{Thomas F\} and Schulz, \{Jana Felicitas\} and Yang, \{Yucheng T\} and Alb{\`a}, \{M Mar\} and Aspden, \{Julie L\} and Baranov, \{Pavel V\} and Bazzini, \{Ariel A\} and Elspeth Bruford and Martin, \{Maria Jesus\} and Lorenzo Calviello and Anne-Ruxandra Carvunis and Jin Chen and Couso, \{Juan Pablo\} and Deutsch, \{Eric W\} and Paul Flicek and Adam Frankish and Mark Gerstein and Norbert Hubner and Ingolia, \{Nicholas T\} and Manolis Kellis and Gerben Menschaert and Moritz, \{Robert L\} and Uwe Ohler and Xavier Roucou and Alan Saghatelian and Weissman, \{Jonathan S\} and \{van Heesch\}, Sebastiaan",

year = "2022",

month = jul,

doi = "10.1038/s41587-022-01369-0",

language = "English",

volume = "40",

pages = "994--999",

journal = "Nature biotechnology",

issn = "1087-0156",

publisher = "Nature Research",

number = "7",

}

Mudge, JM, Ruiz-Orera, J, Prensner, JR, Brunet, MA, Calvet, F, Jungreis, I, Gonzalez, JM, Magrane, M, Martinez, TF, Schulz, JF, Yang, YT, Albà, MM, Aspden, JL, Baranov, PV, Bazzini, AA, Bruford, E, Martin, MJ, Calviello, L, Carvunis, A-R, Chen, J, Couso, JP, Deutsch, EW, Flicek, P, Frankish, A, Gerstein, M, Hubner, N, Ingolia, NT, Kellis, M, Menschaert, G, Moritz, RL, Ohler, U, Roucou, X, Saghatelian, A, Weissman, JS & van Heesch, S 2022, 'Standardized annotation of translated open reading frames', Nature biotechnology, vol. 40, no. 7, pp. 994-999. https://doi.org/10.1038/s41587-022-01369-0

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T1 - Standardized annotation of translated open reading frames

AU - Mudge, Jonathan M

AU - Ruiz-Orera, Jorge

AU - Prensner, John R

AU - Brunet, Marie A

AU - Calvet, Ferriol

AU - Jungreis, Irwin

AU - Gonzalez, Jose Manuel

AU - Magrane, Michele

AU - Martinez, Thomas F

AU - Schulz, Jana Felicitas

AU - Yang, Yucheng T

AU - Albà, M Mar

AU - Aspden, Julie L

AU - Baranov, Pavel V

AU - Bazzini, Ariel A

AU - Bruford, Elspeth

AU - Martin, Maria Jesus

AU - Calviello, Lorenzo

AU - Carvunis, Anne-Ruxandra

AU - Chen, Jin

AU - Couso, Juan Pablo

AU - Deutsch, Eric W

AU - Flicek, Paul

AU - Frankish, Adam

AU - Gerstein, Mark

AU - Hubner, Norbert

AU - Ingolia, Nicholas T

AU - Kellis, Manolis

AU - Menschaert, Gerben

AU - Moritz, Robert L

AU - Ohler, Uwe

AU - Roucou, Xavier

AU - Saghatelian, Alan

AU - Weissman, Jonathan S

AU - van Heesch, Sebastiaan

PY - 2022/7

Y1 - 2022/7

KW - Molecular Sequence Annotation

KW - Open Reading Frames

KW - Protein Biosynthesis

KW - Ribosomes/metabolism

UR - https://www.scopus.com/pages/publications/85134223343

U2 - 10.1038/s41587-022-01369-0

DO - 10.1038/s41587-022-01369-0

M3 - Article

C2 - 35831657

SN - 1087-0156

VL - 40

SP - 994

EP - 999

JO - Nature biotechnology

JF - Nature biotechnology

IS - 7

ER -