ArrayExpress: A public database of gene expression data at EBI

Philippe Rocca-Serra; Alvis Brazma; Helen Parkinson; Ugis Sarkans; Mohammadreza Shojatalab; Sergio Contrino; Jaak Vilo; Niran Abeygunawardena; Gaurab Mukherjee; Ele Holloway; Misha Kapushesky; Patrick Kemmeren; Gonzalo Garcia Lara; Ahmet Oezcimen; Susanna Assunta Sansone

doi:10.1016/j.crvi.2003.09.026

ArrayExpress: A public database of gene expression data at EBI

Philippe Rocca-Serra, Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Sergio Contrino, Jaak Vilo, Niran Abeygunawardena, Gaurab Mukherjee, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Susanna Assunta Sansone

Onderzoeksoutput: Bijdrage aan tijdschrift › Artikel › peer review

70 Citaten (Scopus)

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ArrayExpress is a public repository for microarray-based gene expression data, resulting from the implementation of the MAGE object model to ensure accurate data structuring and the MIAME standard, which defines the annotation requirements. ArrayExpress accepts data as MAGE-ML files for direct submissions or data from MIAMExpress, the MIAME compliant web-based annotation and submission tool of EBI. A team of curators supports the submission process, providing assistance in data annotation. Data retrieval is performed through a dedicated web interface. Relevant results may be exported to Expression-Profiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress).

Originele taal-2	Engels
Pagina's (van-tot)	1075-1078
Aantal pagina's	4
Tijdschrift	Comptes Rendus - Biologies
Volume	326
Nummer van het tijdschrift	10-11
DOI's	https://doi.org/10.1016/j.crvi.2003.09.026
Status	Gepubliceerd - 2003
Extern gepubliceerd	Ja

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10.1016/j.crvi.2003.09.026

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Rocca-Serra, P., Brazma, A., Parkinson, H., Sarkans, U., Shojatalab, M., Contrino, S., Vilo, J., Abeygunawardena, N., Mukherjee, G., Holloway, E., Kapushesky, M., Kemmeren, P., Lara, G. G., Oezcimen, A., & Sansone, S. A. (2003). ArrayExpress: A public database of gene expression data at EBI. Comptes Rendus - Biologies, 326(10-11), 1075-1078. https://doi.org/10.1016/j.crvi.2003.09.026

@article{9a5050a2d3fb44d2bf3440617f3cc1bc,

title = "ArrayExpress: A public database of gene expression data at EBI",

abstract = "ArrayExpress is a public repository for microarray-based gene expression data, resulting from the implementation of the MAGE object model to ensure accurate data structuring and the MIAME standard, which defines the annotation requirements. ArrayExpress accepts data as MAGE-ML files for direct submissions or data from MIAMExpress, the MIAME compliant web-based annotation and submission tool of EBI. A team of curators supports the submission process, providing assistance in data annotation. Data retrieval is performed through a dedicated web interface. Relevant results may be exported to Expression-Profiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress).",

keywords = "ArrayExpress, Database, Expression profiler, MAGE-ML, MGED ontology, MIAME standard, Microarray",

author = "Philippe Rocca-Serra and Alvis Brazma and Helen Parkinson and Ugis Sarkans and Mohammadreza Shojatalab and Sergio Contrino and Jaak Vilo and Niran Abeygunawardena and Gaurab Mukherjee and Ele Holloway and Misha Kapushesky and Patrick Kemmeren and Lara, {Gonzalo Garcia} and Ahmet Oezcimen and Sansone, {Susanna Assunta}",

note = "Funding Information: The ArrayExpress project is funded by EMBL, a grant from the European Commission (TEMBLOR), and a Toxicogenomics database grant from ILSI. Initial funding was provided by Incyte and we particularly thank Lee Grower.",

year = "2003",

doi = "10.1016/j.crvi.2003.09.026",

language = "English",

volume = "326",

pages = "1075--1078",

journal = "Comptes Rendus - Biologies",

issn = "1631-0691",

publisher = "Academie des sciences",

number = "10-11",

}

Rocca-Serra, P, Brazma, A, Parkinson, H, Sarkans, U, Shojatalab, M, Contrino, S, Vilo, J, Abeygunawardena, N, Mukherjee, G, Holloway, E, Kapushesky, M, Kemmeren, P, Lara, GG, Oezcimen, A & Sansone, SA 2003, 'ArrayExpress: A public database of gene expression data at EBI', Comptes Rendus - Biologies, vol. 326, nr. 10-11, blz. 1075-1078. https://doi.org/10.1016/j.crvi.2003.09.026

TY - JOUR

T1 - ArrayExpress

T2 - A public database of gene expression data at EBI

AU - Rocca-Serra, Philippe

AU - Brazma, Alvis

AU - Parkinson, Helen

AU - Sarkans, Ugis

AU - Shojatalab, Mohammadreza

AU - Contrino, Sergio

AU - Vilo, Jaak

AU - Abeygunawardena, Niran

AU - Mukherjee, Gaurab

AU - Holloway, Ele

AU - Kapushesky, Misha

AU - Kemmeren, Patrick

AU - Lara, Gonzalo Garcia

AU - Oezcimen, Ahmet

AU - Sansone, Susanna Assunta

N1 - Funding Information: The ArrayExpress project is funded by EMBL, a grant from the European Commission (TEMBLOR), and a Toxicogenomics database grant from ILSI. Initial funding was provided by Incyte and we particularly thank Lee Grower.

PY - 2003

Y1 - 2003

N2 - ArrayExpress is a public repository for microarray-based gene expression data, resulting from the implementation of the MAGE object model to ensure accurate data structuring and the MIAME standard, which defines the annotation requirements. ArrayExpress accepts data as MAGE-ML files for direct submissions or data from MIAMExpress, the MIAME compliant web-based annotation and submission tool of EBI. A team of curators supports the submission process, providing assistance in data annotation. Data retrieval is performed through a dedicated web interface. Relevant results may be exported to Expression-Profiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress).

AB - ArrayExpress is a public repository for microarray-based gene expression data, resulting from the implementation of the MAGE object model to ensure accurate data structuring and the MIAME standard, which defines the annotation requirements. ArrayExpress accepts data as MAGE-ML files for direct submissions or data from MIAMExpress, the MIAME compliant web-based annotation and submission tool of EBI. A team of curators supports the submission process, providing assistance in data annotation. Data retrieval is performed through a dedicated web interface. Relevant results may be exported to Expression-Profiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress).

KW - ArrayExpress

KW - Database

KW - Expression profiler

KW - MAGE-ML

KW - MGED ontology

KW - MIAME standard

KW - Microarray

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AN - SCOPUS:9144231310

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JO - Comptes Rendus - Biologies

JF - Comptes Rendus - Biologies

IS - 10-11

ER -

ArrayExpress: A public database of gene expression data at EBI

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