TY - JOUR
T1 - On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types
T2 - Chronicles of the MEMENTO challenge
AU - De Luca, Alberto
AU - Ianus, Andrada
AU - Leemans, Alexander
AU - Palombo, Marco
AU - Shemesh, Noam
AU - Zhang, Hui
AU - Alexander, Daniel C.
AU - Nilsson, Markus
AU - Froeling, Martijn
AU - Biessels, Geert Jan
AU - Zucchelli, Mauro
AU - Frigo, Matteo
AU - Albay, Enes
AU - Sedlar, Sara
AU - Alimi, Abib
AU - Deslauriers-Gauthier, Samuel
AU - Deriche, Rachid
AU - Fick, Rutger
AU - Afzali, Maryam
AU - Pieciak, Tomasz
AU - Bogusz, Fabian
AU - Aja-Fernández, Santiago
AU - Özarslan, Evren
AU - Jones, Derek K.
AU - Chen, Haoze
AU - Jin, Mingwu
AU - Zhang, Zhijie
AU - Wang, Fengxiang
AU - Nath, Vishwesh
AU - Parvathaneni, Prasanna
AU - Morez, Jan
AU - Sijbers, Jan
AU - Jeurissen, Ben
AU - Fadnavis, Shreyas
AU - Endres, Stefan
AU - Rokem, Ariel
AU - Garyfallidis, Eleftherios
AU - Sanchez, Irina
AU - Prchkovska, Vesna
AU - Rodrigues, Paulo
AU - Landman, Bennet A.
AU - Schilling, Kurt G.
N1 - Publisher Copyright:
© 2021
PY - 2021/10/15
Y1 - 2021/10/15
N2 - Diffusion MRI (dMRI) has become an invaluable tool to assess the microstructural organization of brain tissue. Depending on the specific acquisition settings, the dMRI signal encodes specific properties of the underlying diffusion process. In the last two decades, several signal representations have been proposed to fit the dMRI signal and decode such properties. Most methods, however, are tested and developed on a limited amount of data, and their applicability to other acquisition schemes remains unknown. With this work, we aimed to shed light on the generalizability of existing dMRI signal representations to different diffusion encoding parameters and brain tissue types. To this end, we organized a community challenge - named MEMENTO, making available the same datasets for fair comparisons across algorithms and techniques. We considered two state-of-the-art diffusion datasets, including single-diffusion-encoding (SDE) spin-echo data from a human brain with over 3820 unique diffusion weightings (the MASSIVE dataset), and double (oscillating) diffusion encoding data (DDE/DODE) of a mouse brain including over 2520 unique data points. A subset of the data sampled in 5 different voxels was openly distributed, and the challenge participants were asked to predict the remaining part of the data. After one year, eight participant teams submitted a total of 80 signal fits. For each submission, we evaluated the mean squared error, the variance of the prediction error and the Bayesian information criteria. The received submissions predicted either multi-shell SDE data (37%) or DODE data (22%), followed by cartesian SDE data (19%) and DDE (18%). Most submissions predicted the signals measured with SDE remarkably well, with the exception of low and very strong diffusion weightings. The prediction of DDE and DODE data seemed more challenging, likely because none of the submissions explicitly accounted for diffusion time and frequency. Next to the choice of the model, decisions on fit procedure and hyperparameters play a major role in the prediction performance, highlighting the importance of optimizing and reporting such choices. This work is a community effort to highlight strength and limitations of the field at representing dMRI acquired with trending encoding schemes, gaining insights into how different models generalize to different tissue types and fiber configurations over a large range of diffusion encodings.
AB - Diffusion MRI (dMRI) has become an invaluable tool to assess the microstructural organization of brain tissue. Depending on the specific acquisition settings, the dMRI signal encodes specific properties of the underlying diffusion process. In the last two decades, several signal representations have been proposed to fit the dMRI signal and decode such properties. Most methods, however, are tested and developed on a limited amount of data, and their applicability to other acquisition schemes remains unknown. With this work, we aimed to shed light on the generalizability of existing dMRI signal representations to different diffusion encoding parameters and brain tissue types. To this end, we organized a community challenge - named MEMENTO, making available the same datasets for fair comparisons across algorithms and techniques. We considered two state-of-the-art diffusion datasets, including single-diffusion-encoding (SDE) spin-echo data from a human brain with over 3820 unique diffusion weightings (the MASSIVE dataset), and double (oscillating) diffusion encoding data (DDE/DODE) of a mouse brain including over 2520 unique data points. A subset of the data sampled in 5 different voxels was openly distributed, and the challenge participants were asked to predict the remaining part of the data. After one year, eight participant teams submitted a total of 80 signal fits. For each submission, we evaluated the mean squared error, the variance of the prediction error and the Bayesian information criteria. The received submissions predicted either multi-shell SDE data (37%) or DODE data (22%), followed by cartesian SDE data (19%) and DDE (18%). Most submissions predicted the signals measured with SDE remarkably well, with the exception of low and very strong diffusion weightings. The prediction of DDE and DODE data seemed more challenging, likely because none of the submissions explicitly accounted for diffusion time and frequency. Next to the choice of the model, decisions on fit procedure and hyperparameters play a major role in the prediction performance, highlighting the importance of optimizing and reporting such choices. This work is a community effort to highlight strength and limitations of the field at representing dMRI acquired with trending encoding schemes, gaining insights into how different models generalize to different tissue types and fiber configurations over a large range of diffusion encodings.
UR - http://www.scopus.com/inward/record.url?scp=85110174661&partnerID=8YFLogxK
U2 - 10.1016/j.neuroimage.2021.118367
DO - 10.1016/j.neuroimage.2021.118367
M3 - Article
C2 - 34237442
AN - SCOPUS:85110174661
SN - 1053-8119
VL - 240
JO - NeuroImage
JF - NeuroImage
M1 - 118367
ER -