TY - JOUR
T1 - Organocatalytic Switches of DNA Glycosylase OGG1 Catalyze a Highly Efficient AP-Lyase Function
AU - Kehler, Mario
AU - Zhou, Kaixin
AU - Kemas, Aurino M.
AU - del Prado, Alicia
AU - Hutchinson, Emma Scaletti
AU - Nairn, Elinor Hesslefors
AU - Varga, Marek
AU - Plattner, Yvonne
AU - Zhong, Yi
AU - Purewal-Sidhu, Oryn
AU - Haslam, James
AU - Wiita, Elisée
AU - Gildie, Heather
AU - Singerova, Karolina
AU - Szaruga, Zuzanna
AU - Almlöf, Ingrid
AU - Hormann, Femke M.
AU - Liu, Kang Cheng
AU - Wallner, Olov
AU - Ortis, Florian
AU - Homan, Evert J.
AU - Gileadi, Opher
AU - Rudd, Sean G.
AU - Stenmark, Pål
AU - de Vega, Miguel
AU - Helleday, Thomas
AU - D'Arcy-Evans, Nicholas D.
AU - Lauschke, Volker M.
AU - Michel, Maurice
N1 - © 2025 The Author(s). Chemistry – A European Journal published by Wiley‐VCH GmbH.
PY - 2025/6/12
Y1 - 2025/6/12
N2 - 8-oxoGuanine DNA glycosylase 1 (OGG1) is the first known target of organocatalytic switches (ORCAs), which rewrite the biochemical function of the enzyme through redirection of its preferred substrate from 8-oxoG to AP sites. Previously, different ORCA chemotypes were shown to enhance the operational pH window for OGG1, possibly through direct involvement in proton transfer events during DNA strand cleavage. Accordingly, compound pKa is a crucial and necessary consideration for the identification and application of future OGG1 ORCAs. Here, we identify a minimal structure of organocatalytic switches–4-anilino pyridines and 6-anilino pyrimidines–which are dimethyl-amino-pyridine (DMAP)-type Brønsted bases binding the active site of OGG1. Systematic interrogation of compound basicity through modulation of electron-withdrawing (EWG) and electron-donating (EDG) substituents reveals that a pKa less or equal to the assay pH is a viable parameter for prediction of compound activity. The lead structure (AC50 13 nM, pKa 7.0) was then identified as a potent scaffold from a screen in a patient-derived 3D model of metabolic dysfunction-associated steatohepatitis (MASH), where it reduced hepatic fibrosis by 35%. Collectively, these findings deepen the knowledge of this novel modulator class, with important implications for future enzyme targets and probe development.
AB - 8-oxoGuanine DNA glycosylase 1 (OGG1) is the first known target of organocatalytic switches (ORCAs), which rewrite the biochemical function of the enzyme through redirection of its preferred substrate from 8-oxoG to AP sites. Previously, different ORCA chemotypes were shown to enhance the operational pH window for OGG1, possibly through direct involvement in proton transfer events during DNA strand cleavage. Accordingly, compound pKa is a crucial and necessary consideration for the identification and application of future OGG1 ORCAs. Here, we identify a minimal structure of organocatalytic switches–4-anilino pyridines and 6-anilino pyrimidines–which are dimethyl-amino-pyridine (DMAP)-type Brønsted bases binding the active site of OGG1. Systematic interrogation of compound basicity through modulation of electron-withdrawing (EWG) and electron-donating (EDG) substituents reveals that a pKa less or equal to the assay pH is a viable parameter for prediction of compound activity. The lead structure (AC50 13 nM, pKa 7.0) was then identified as a potent scaffold from a screen in a patient-derived 3D model of metabolic dysfunction-associated steatohepatitis (MASH), where it reduced hepatic fibrosis by 35%. Collectively, these findings deepen the knowledge of this novel modulator class, with important implications for future enzyme targets and probe development.
KW - Base excision repair
KW - DNA glycosylase
KW - DNA repair
KW - OGG1
KW - Organocatalytic switches
KW - DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism
KW - Catalytic Domain
KW - Pyrimidines/chemistry
KW - Humans
KW - Guanine/analogs & derivatives
KW - DNA/chemistry
KW - Pyridines/chemistry
KW - DNA Glycosylases/metabolism
KW - Catalysis
KW - Hydrogen-Ion Concentration
UR - https://www.scopus.com/pages/publications/105005228842
UR - https://www.mendeley.com/catalogue/3b93c7a3-02a5-3f8a-b365-c15d5ffd11e4/
U2 - 10.1002/chem.202500382
DO - 10.1002/chem.202500382
M3 - Article
C2 - 40294343
AN - SCOPUS:105005228842
SN - 0947-6539
VL - 31
JO - Chemistry - A European Journal
JF - Chemistry - A European Journal
IS - 33
M1 - e202500382
ER -